Generic Method for fitting model

S3 generic for fitted models from constructed model object

Usage

fit_model(constructed_model, iter = 2000, warmup = 1000, chains = 3)

Arguments

constructed_model

prepared model object of class `EpiStrainDynamics.model`

iter

number of iterations, defaults to 2000

warmup

number of warmup iterations, defaults to 1000

chains

number of chains, defaults to 3

Value

fit model of class `EpiStrainDynamics.fit`

Examples

if (FALSE) { # \dontrun{
  mod <- construct_model(
    method = random_walk(),
    pathogen_structure = single(
      case_timeseries = sarscov2$cases,
      time = sarscov2$date))

  fit <- fit_model(mod)

  # or specify additional mcmc parameters
  fit <- fit_model(
    mod, iter = 3000, warmup = 2000, chains = 4
  )
} # }